Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs11952911 chr5:20942913 T/C 7.08E-7 184 13.35 12.33 2.7 KM Plot
ESCA rs11968450 chr6:117999813 A/G 2.73E-6 184 2.93 12.33 13.4 KM Plot
ESCA rs11991780 chr8:120869185 T/C 4.88E-7 181 13 18.6 3.73 KM Plot
ESCA rs12116484 chr1:247207285 A/G 4.56E-7 184 13.22 17.22 3.87 KM Plot
ESCA rs12120876 chr1:247205960 A/T 4.66E-7 184 13.1 15.57 3.87 KM Plot
ESCA rs12123948 chr1:247207155 C/T 4.66E-7 184 13.1 15.57 3.87 KM Plot
ESCA rs12139893 chr1:247208406 G/A 4.66E-7 184 13.1 15.57 3.87 KM Plot
ESCA rs12148870 chr15:67124389 C/T 8.53E-5 176 13.38 14.5 6 KM Plot
ESCA rs12148891 chr15:67124581 G/A 9.81E-5 178 13.37 14.78 6 KM Plot
ESCA rs12242908 chr10:126733722 A/G 1.99E-5 183 13.37 12.97 5.8 KM Plot
ESCA rs12246653 chr10:126737234 C/G 3.71E-5 180 13.37 13.33 5.8 KM Plot
ESCA rs12255887 chr10:126724670 G/A 3.32E-5 184 13.37 10.53 7.87 KM Plot
ESCA rs12312675 chr12:123810462 T/C 1.73E-7 180 13.1 15.87 2.7 KM Plot
ESCA rs12330925 chr3:107359264 A/T 6.9E-10 180 13.22 17.5 3.33 KM Plot
ESCA rs12353960 chr1:247256601 C/T 4.0E-7 184 13.1 20.3 3.87 KM Plot